Index Symbols | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Z Symbols --adaptive_scope_reduction pharmpy-run-covsearch command line option --administration pharmpy-run-amd command line option --algorithm pharmpy-run-covsearch command line option pharmpy-run-iivsearch command line option --allometric_variable pharmpy-run-allometry command line option pharmpy-run-amd command line option --b_init pharmpy-run-amd command line option --cl_init pharmpy-run-amd command line option --column pharmpy-run-iovsearch command line option --columns pharmpy-data-print command line option --correlation_algorithm pharmpy-run-iivsearch command line option --cutoff pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-modelsearch command line option --datecols pharmpy-data-deidentify command line option --distribution pharmpy-run-iovsearch command line option --dv pharmpy-run-ruvsearch command line option --dv_types pharmpy-run-amd command line option --e pharmpy-run-iovsearch command line option pharmpy-run-modelsearch command line option --e_p pharmpy-run-iivsearch command line option --e_q pharmpy-run-iivsearch command line option --ec50_init pharmpy-run-amd command line option --emax_init pharmpy-run-amd command line option --explicit-odes pharmpy-model-print command line option --force pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-reference command line option pharmpy-data-write command line option pharmpy-model-update_inits command line option --force_posdef_covmatrix pharmpy-psn-frem command line option --force_posdef_samples pharmpy-psn-frem command line option --group pharmpy-data-resample command line option --groups pharmpy-run-ruvsearch command line option --help pharmpy command line option pharmpy-data command line option pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-print command line option pharmpy-data-reference command line option pharmpy-data-resample command line option pharmpy-data-write command line option pharmpy-info command line option pharmpy-model command line option pharmpy-model-print command line option pharmpy-model-sample command line option pharmpy-model-update_inits command line option pharmpy-psn command line option pharmpy-psn-bootstrap command line option pharmpy-psn-cdd command line option pharmpy-psn-frem command line option pharmpy-psn-linearize command line option pharmpy-psn-print command line option pharmpy-psn-qa command line option pharmpy-psn-report command line option pharmpy-psn-ruvsearch command line option pharmpy-psn-scm command line option pharmpy-psn-simeval command line option pharmpy-results command line option pharmpy-results-summary command line option pharmpy-run command line option pharmpy-run-allometry command line option pharmpy-run-amd command line option pharmpy-run-bootstrap command line option pharmpy-run-covsearch command line option pharmpy-run-estmethod command line option pharmpy-run-execute command line option pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-linearize command line option pharmpy-run-modelsearch command line option pharmpy-run-ruvsearch command line option --idcol pharmpy-data-deidentify command line option --ignore_datainfo_fallback pharmpy-run-amd command line option --iiv_strategy pharmpy-run-iivsearch command line option pharmpy-run-modelsearch command line option --initials pharmpy-run-allometry command line option --keep pharmpy-run-iivsearch command line option --linearize pharmpy-run-iivsearch command line option --list_of_parameters pharmpy-run-iovsearch command line option --lloq_limit pharmpy-run-amd command line option --lloq_method pharmpy-run-amd command line option --lower_bounds pharmpy-run-allometry command line option --mat_init pharmpy-run-amd command line option --max_eval pharmpy-run-covsearch command line option --max_iter pharmpy-run-ruvsearch command line option --max_steps pharmpy-run-covsearch command line option --mechanistic_covariates pharmpy-run-amd command line option --met_init pharmpy-run-amd command line option --method pharmpy-psn-frem command line option --methods pharmpy-run-estmethod command line option --modeltype pharmpy-run-amd command line option --naming_index_offset pharmpy-run-covsearch command line option --non_fixed pharmpy-run-allometry command line option --occasion pharmpy-run-amd command line option --output_file pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-reference command line option pharmpy-data-write command line option pharmpy-model-update_inits command line option --p_backward pharmpy-run-covsearch command line option --p_forward pharmpy-run-covsearch command line option --p_value pharmpy-run-ruvsearch command line option --parameter_uncertainty_method pharmpy-run-amd command line option --parameter_uncertainty_methods pharmpy-run-estmethod command line option --parameters pharmpy-run-allometry command line option --path pharmpy-run-allometry command line option pharmpy-run-amd command line option pharmpy-run-covsearch command line option pharmpy-run-estmethod command line option pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-linearize command line option pharmpy-run-modelsearch command line option pharmpy-run-ruvsearch command line option --rank_type pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-modelsearch command line option --reference_value pharmpy-run-allometry command line option --replace pharmpy-data-resample command line option --resamples pharmpy-data-resample command line option --results pharmpy-run-amd command line option --resume pharmpy-run-amd command line option --retries_strategy pharmpy-run-amd command line option --sample_size pharmpy-data-resample command line option --samples pharmpy-model-sample command line option pharmpy-run-bootstrap command line option --search_space pharmpy-run-amd command line option pharmpy-run-covsearch command line option --seed pharmpy-data-resample command line option pharmpy-model-sample command line option pharmpy-run-amd command line option --skip pharmpy-run-ruvsearch command line option --solvers pharmpy-run-estmethod command line option --strategy pharmpy-run-amd command line option --stratify pharmpy-data-resample command line option --strictness pharmpy-run-amd command line option pharmpy-run-covsearch command line option pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-modelsearch command line option pharmpy-run-ruvsearch command line option --upper_bounds pharmpy-run-allometry command line option --vc_init pharmpy-run-amd command line option --version pharmpy command line option -f pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-reference command line option pharmpy-data-write command line option pharmpy-model-update_inits command line option -h pharmpy command line option pharmpy-data command line option pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-print command line option pharmpy-data-reference command line option pharmpy-data-resample command line option pharmpy-data-write command line option pharmpy-info command line option pharmpy-model command line option pharmpy-model-print command line option pharmpy-model-sample command line option pharmpy-model-update_inits command line option pharmpy-psn command line option pharmpy-psn-bootstrap command line option pharmpy-psn-cdd command line option pharmpy-psn-frem command line option pharmpy-psn-linearize command line option pharmpy-psn-print command line option pharmpy-psn-qa command line option pharmpy-psn-report command line option pharmpy-psn-ruvsearch command line option pharmpy-psn-scm command line option pharmpy-psn-simeval command line option pharmpy-results command line option pharmpy-results-summary command line option pharmpy-run command line option pharmpy-run-allometry command line option pharmpy-run-amd command line option pharmpy-run-bootstrap command line option pharmpy-run-covsearch command line option pharmpy-run-estmethod command line option pharmpy-run-execute command line option pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-linearize command line option pharmpy-run-modelsearch command line option pharmpy-run-ruvsearch command line option -o pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-reference command line option pharmpy-data-write command line option pharmpy-model-update_inits command line option A abort_workflow() (pharmpy.workflows.Context method) add_admid() (in module pharmpy.modeling) add_allometry() (in module pharmpy.modeling) add_bioavailability() (in module pharmpy.modeling) add_cmt() (in module pharmpy.modeling) add_compartment() (pharmpy.model.CompartmentalSystemBuilder method) add_covariate_effect() (in module pharmpy.modeling) add_derivative() (in module pharmpy.modeling) add_dose() (pharmpy.model.CompartmentalSystemBuilder method) add_effect_compartment() (in module pharmpy.modeling) add_estimation_step() (in module pharmpy.modeling) add_flow() (pharmpy.model.CompartmentalSystemBuilder method) add_iiv() (in module pharmpy.modeling) add_indirect_effect() (in module pharmpy.modeling) add_individual_parameter() (in module pharmpy.modeling) add_iov() (in module pharmpy.modeling) add_lag_time() (in module pharmpy.modeling) add_metabolite() (in module pharmpy.modeling) add_parameter_uncertainty_step() (in module pharmpy.modeling) add_pd_iiv() (in module pharmpy.modeling) add_peripheral_compartment() (in module pharmpy.modeling) add_pk_iiv() (in module pharmpy.modeling) add_population_parameter() (in module pharmpy.modeling) add_predictions() (in module pharmpy.modeling) add_residuals() (in module pharmpy.modeling) add_task() (pharmpy.workflows.WorkflowBuilder method) add_time_after_dose() (in module pharmpy.modeling) after_odes (pharmpy.model.Statements attribute) algorithm pharmpy-run-estmethod command line option pharmpy-run-modelsearch command line option amount (pharmpy.model.Bolus attribute) (pharmpy.model.Compartment attribute) amounts (pharmpy.model.CompartmentalSystem attribute) append_estimation_step_options() (in module pharmpy.modeling) as_dask_dict() (pharmpy.workflows.Workflow method) Assignment (class in pharmpy.model) attach_results() (pharmpy.workflows.ModelEntry method) auto (pharmpy.model.EstimationStep attribute) B before_odes (pharmpy.model.Statements attribute) bin_observations() (in module pharmpy.modeling) bioavailability (pharmpy.model.Compartment attribute) Bolus (class in pharmpy.model) bump_model_number() (in module pharmpy.modeling) C calculate_aic() (in module pharmpy.modeling) calculate_bic() (in module pharmpy.modeling) calculate_corr_from_cov() (in module pharmpy.modeling) calculate_corr_from_prec() (in module pharmpy.modeling) calculate_cov_from_corrse() (in module pharmpy.modeling) calculate_cov_from_prec() (in module pharmpy.modeling) calculate_epsilon_gradient_expression() (in module pharmpy.modeling) calculate_eta_gradient_expression() (in module pharmpy.modeling) calculate_eta_shrinkage() (in module pharmpy.modeling) calculate_individual_parameter_statistics() (in module pharmpy.modeling) calculate_individual_shrinkage() (in module pharmpy.modeling) calculate_parameters_from_ucp() (in module pharmpy.modeling) calculate_pk_parameters_statistics() (in module pharmpy.modeling) calculate_prec_from_corrse() (in module pharmpy.modeling) calculate_prec_from_cov() (in module pharmpy.modeling) calculate_se_from_cov() (in module pharmpy.modeling) calculate_se_from_prec() (in module pharmpy.modeling) calculate_ucp_scale() (in module pharmpy.modeling) call_workflow() (pharmpy.workflows.Context method) categories (pharmpy.model.ColumnInfo attribute) central_compartment (pharmpy.model.CompartmentalSystem attribute) check_dataset() (in module pharmpy.modeling) check_high_correlations() (in module pharmpy.modeling) check_parameters_near_bounds() (in module pharmpy.modeling) cleanup_model() (in module pharmpy.modeling) code (pharmpy.model.Model attribute) colname pharmpy-data-reference command line option ColumnInfo (class in pharmpy.model) compare_ofv pharmpy-run-estmethod command line option Compartment (class in pharmpy.model) compartment_names (pharmpy.model.CompartmentalSystem attribute) compartmental_matrix (pharmpy.model.CompartmentalSystem attribute) CompartmentalSystem (class in pharmpy.model) CompartmentalSystemBuilder (class in pharmpy.model) Context (class in pharmpy.workflows) context_path (pharmpy.workflows.Context attribute) (pharmpy.workflows.LocalDirectoryContext attribute) continuous (pharmpy.model.ColumnInfo attribute) convert_datatype_to_pd_dtype() (pharmpy.model.ColumnInfo static method) convert_model() (in module pharmpy.modeling) convert_pd_dtype_to_datatype() (pharmpy.model.ColumnInfo static method) correlation_matrix (pharmpy.workflows.ModelfitResults attribute) covariance_matrix (pharmpy.model.RandomVariables attribute) (pharmpy.workflows.ModelfitResults attribute) covstep_successful (pharmpy.workflows.ModelfitResults attribute) create() (pharmpy.model.Assignment class method) (pharmpy.model.Bolus class method) (pharmpy.model.ColumnInfo class method) (pharmpy.model.Compartment class method) (pharmpy.model.CompartmentalSystem class method) (pharmpy.model.DataInfo class method) (pharmpy.model.EstimationStep class method) (pharmpy.model.ExecutionSteps class method) (pharmpy.model.Infusion class method) (pharmpy.model.JointNormalDistribution class method) (pharmpy.model.Model class method) (pharmpy.model.NormalDistribution class method) (pharmpy.model.Parameter class method) (pharmpy.model.Parameters class method) (pharmpy.model.RandomVariables class method) (pharmpy.model.SimulationStep class method) (pharmpy.model.Statements class method) (pharmpy.model.VariabilityHierarchy class method) (pharmpy.model.VariabilityLevel class method) (pharmpy.workflows.ModelEntry class method) (pharmpy.workflows.Task class method) (pharmpy.workflows.Workflow class method) create_basic_pk_model() (in module pharmpy.modeling) create_config_template() (in module pharmpy.modeling) create_joint_distribution() (in module pharmpy.modeling) create_report() (in module pharmpy.tools) create_rng() (in module pharmpy.modeling) create_subcontext() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) create_symbol() (in module pharmpy.modeling) D DataInfo (class in pharmpy.model) datainfo (pharmpy.model.Model attribute) dataset (pharmpy.model.Model attribute) DatasetError DatasetWarning datatype (pharmpy.model.ColumnInfo attribute) default_context (in module pharmpy.workflows) default_model_database (in module pharmpy.workflows) deidentify_data() (in module pharmpy.modeling) dependencies() (pharmpy.model.Statements method) dependent_variables (pharmpy.model.Model attribute) derivatives (pharmpy.model.EstimationStep attribute) (pharmpy.workflows.ModelfitResults attribute) description (pharmpy.model.Model attribute) descriptor (pharmpy.model.ColumnInfo attribute) descriptorix (pharmpy.model.DataInfo attribute) direct_dependencies() (pharmpy.model.Statements method) display_odes() (in module pharmpy.modeling) Distribution (class in pharmpy.model) doses (pharmpy.model.Compartment attribute) dosing_compartments (pharmpy.model.CompartmentalSystem attribute) drop (pharmpy.model.ColumnInfo attribute) drop_columns() (in module pharmpy.modeling) drop_dropped_columns() (in module pharmpy.modeling) duration (pharmpy.model.Infusion attribute) dv_column (pharmpy.model.DataInfo attribute) E epsilon_levels (pharmpy.model.RandomVariables attribute) epsilons (pharmpy.model.RandomVariables attribute) eqs (pharmpy.model.CompartmentalSystem attribute) error (pharmpy.model.Statements attribute) errors (pharmpy.workflows.Log attribute) estimation_runtime (pharmpy.workflows.ModelfitResults attribute) estimation_runtime_iterations (pharmpy.workflows.ModelfitResults attribute) EstimationStep (class in pharmpy.model) eta_levels (pharmpy.model.RandomVariables attribute) etas (pharmpy.model.RandomVariables attribute) evalf() (pharmpy.model.Distribution method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.NormalDistribution method) evaluate_epsilon_gradient() (in module pharmpy.modeling) evaluate_eta_gradient() (in module pharmpy.modeling) evaluate_expression() (in module pharmpy.modeling) evaluate_individual_prediction() (in module pharmpy.modeling) evaluate_population_prediction() (in module pharmpy.modeling) evaluate_weighted_residuals() (in module pharmpy.modeling) evaluation (pharmpy.model.EstimationStep attribute) (pharmpy.workflows.ModelfitResults attribute) execute_workflow() (in module pharmpy.workflows) execution_steps (pharmpy.model.Model attribute) ExecutionSteps (class in pharmpy.model) exists() (pharmpy.workflows.Context static method) (pharmpy.workflows.LocalDirectoryContext static method) expand_additional_doses() (in module pharmpy.modeling) expression pharmpy-data-append command line option expression (pharmpy.model.Assignment attribute) expressions pharmpy-data-filter command line option F file pharmpy-data-append command line option pharmpy-data-deidentify command line option pharmpy-data-filter command line option pharmpy-data-print command line option pharmpy-data-reference command line option pharmpy-data-resample command line option pharmpy-data-write command line option pharmpy-model-print command line option pharmpy-model-sample command line option pharmpy-model-update_inits command line option pharmpy-psn-print command line option pharmpy-results-summary command line option pharmpy-run-allometry command line option pharmpy-run-amd command line option pharmpy-run-bootstrap command line option pharmpy-run-covsearch command line option pharmpy-run-estmethod command line option pharmpy-run-execute command line option pharmpy-run-iivsearch command line option pharmpy-run-iovsearch command line option pharmpy-run-linearize command line option pharmpy-run-modelsearch command line option pharmpy-run-ruvsearch command line option filename_extension (pharmpy.model.Model attribute) filter_dataset() (in module pharmpy.modeling) find_assignment() (pharmpy.model.Statements method) find_assignment_index() (pharmpy.model.Statements method) find_clearance_parameters() (in module pharmpy.modeling) find_compartment() (pharmpy.model.CompartmentalSystem method) (pharmpy.model.CompartmentalSystemBuilder method) find_compartment_or_raise() (pharmpy.model.CompartmentalSystem method) find_depot() (pharmpy.model.CompartmentalSystem method) find_peripheral_compartments() (pharmpy.model.CompartmentalSystem method) find_transit_compartments() (pharmpy.model.CompartmentalSystem method) find_volume_parameters() (in module pharmpy.modeling) fit() (in module pharmpy.tools) fix (pharmpy.model.Parameter attribute) (pharmpy.model.Parameters attribute) fix_or_unfix_parameters() (in module pharmpy.modeling) fix_parameters() (in module pharmpy.modeling) fix_parameters_to() (in module pharmpy.modeling) fixed (pharmpy.model.Parameters attribute) free_symbols (pharmpy.model.Assignment attribute) (pharmpy.model.Bolus attribute) (pharmpy.model.Compartment attribute) (pharmpy.model.CompartmentalSystem attribute) (pharmpy.model.Distribution attribute) (pharmpy.model.Infusion attribute) (pharmpy.model.JointNormalDistribution attribute) (pharmpy.model.NormalDistribution attribute) (pharmpy.model.RandomVariables attribute) (pharmpy.model.Statement attribute) (pharmpy.model.Statements attribute) from_dict() (pharmpy.model.Assignment class method) (pharmpy.model.Bolus class method) (pharmpy.model.ColumnInfo class method) (pharmpy.model.Compartment class method) (pharmpy.model.CompartmentalSystem class method) (pharmpy.model.DataInfo class method) (pharmpy.model.EstimationStep class method) (pharmpy.model.ExecutionSteps class method) (pharmpy.model.Infusion class method) (pharmpy.model.JointNormalDistribution class method) (pharmpy.model.Model class method) (pharmpy.model.NormalDistribution class method) (pharmpy.model.Parameter class method) (pharmpy.model.Parameters class method) (pharmpy.model.RandomVariables class method) (pharmpy.model.SimulationStep class method) (pharmpy.model.Statements class method) (pharmpy.model.VariabilityHierarchy class method) (pharmpy.model.VariabilityLevel class method) (pharmpy.workflows.Log class method) (pharmpy.workflows.Results class method) from_json() (pharmpy.model.DataInfo static method) full_expression() (pharmpy.model.Statements method) function (pharmpy.workflows.Task attribute) function_evaluations (pharmpy.workflows.ModelfitResults attribute) function_evaluations_iterations (pharmpy.workflows.ModelfitResults attribute) G get_admid() (in module pharmpy.modeling) get_all_categories() (pharmpy.model.ColumnInfo method) get_and_check_dataset() (in module pharmpy.model) get_and_check_odes() (in module pharmpy.model) get_and_reset_index() (pharmpy.workflows.Results method) get_baselines() (in module pharmpy.modeling) get_bidirectionals() (pharmpy.model.CompartmentalSystem method) get_bioavailability() (in module pharmpy.modeling) get_central_volume_and_clearance() (in module pharmpy.modeling) get_cmt() (in module pharmpy.modeling) get_compartment_inflows() (pharmpy.model.CompartmentalSystem method) get_compartment_outflows() (pharmpy.model.CompartmentalSystem method) get_concentration_parameters_from_data() (in module pharmpy.modeling) get_config_path() (in module pharmpy.modeling) get_covariance() (pharmpy.model.Distribution method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.NormalDistribution method) (pharmpy.model.RandomVariables method) get_covariate_baselines() (in module pharmpy.modeling) get_covariate_effects() (in module pharmpy.modeling) get_doseid() (in module pharmpy.modeling) get_doses() (in module pharmpy.modeling) get_dtype_dict() (pharmpy.model.DataInfo method) get_dv_symbol() (in module pharmpy.modeling) get_evid() (in module pharmpy.modeling) get_flow() (pharmpy.model.CompartmentalSystem method) get_ids() (in module pharmpy.modeling) get_individual_parameters() (in module pharmpy.modeling) get_individual_prediction_expression() (in module pharmpy.modeling) get_initial_conditions() (in module pharmpy.modeling) get_lag_times() (in module pharmpy.modeling) get_mdv() (in module pharmpy.modeling) get_model_code() (in module pharmpy.modeling) get_model_context_path() (pharmpy.workflows.Context method) get_model_covariates() (in module pharmpy.modeling) get_mu_connected_to_parameter() (in module pharmpy.modeling) get_n_connected() (pharmpy.model.CompartmentalSystem method) get_number_of_individuals() (in module pharmpy.modeling) get_number_of_observations() (in module pharmpy.modeling) get_number_of_observations_per_individual() (in module pharmpy.modeling) get_number_of_peripheral_compartments() (in module pharmpy.modeling) get_number_of_transit_compartments() (in module pharmpy.modeling) get_observation_expression() (in module pharmpy.modeling) get_observations() (in module pharmpy.modeling) get_omegas() (in module pharmpy.modeling) get_parameter_rv() (in module pharmpy.modeling) get_parent_context() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) get_pd_parameters() (in module pharmpy.modeling) get_pk_parameters() (in module pharmpy.modeling) get_population_prediction_expression() (in module pharmpy.modeling) get_rv_parameters() (in module pharmpy.modeling) get_rvs_with_same_dist() (pharmpy.model.RandomVariables method) get_sigmas() (in module pharmpy.modeling) get_subcontext() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) get_thetas() (in module pharmpy.modeling) get_unit_of() (in module pharmpy.modeling) get_variance() (pharmpy.model.Distribution method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.NormalDistribution method) get_zero_order_inputs() (in module pharmpy.modeling) gradients (pharmpy.workflows.ModelfitResults attribute) gradients_iterations (pharmpy.workflows.ModelfitResults attribute) greekify_model() (in module pharmpy.modeling) group (pharmpy.model.VariabilityLevel attribute) H has_additive_error_model() (in module pharmpy.modeling) has_combined_error_model() (in module pharmpy.modeling) has_covariate_effect() (in module pharmpy.modeling) has_first_order_absorption() (in module pharmpy.modeling) has_first_order_elimination() (in module pharmpy.modeling) has_instantaneous_absorption() (in module pharmpy.modeling) has_linear_odes() (in module pharmpy.modeling) has_linear_odes_with_real_eigenvalues() (in module pharmpy.modeling) has_michaelis_menten_elimination() (in module pharmpy.modeling) has_mixed_mm_fo_elimination() (in module pharmpy.modeling) has_mu_reference() (in module pharmpy.modeling) has_odes() (in module pharmpy.modeling) has_presystemic_metabolite() (in module pharmpy.modeling) has_proportional_error_model() (in module pharmpy.modeling) has_random_effect() (in module pharmpy.modeling) has_same_dataset_as() (pharmpy.model.Model method) has_seq_zo_fo_absorption() (in module pharmpy.modeling) has_weighted_error_model() (in module pharmpy.modeling) has_zero_order_absorption() (in module pharmpy.modeling) has_zero_order_elimination() (in module pharmpy.modeling) I id_column (pharmpy.model.DataInfo attribute) idv_column (pharmpy.model.DataInfo attribute) iiv (pharmpy.model.RandomVariables attribute) individual_estimates (pharmpy.workflows.ModelfitResults attribute) individual_estimates_covariance (pharmpy.workflows.ModelfitResults attribute) individual_eta_samples (pharmpy.model.EstimationStep attribute) (pharmpy.workflows.ModelfitResults attribute) individual_ofv (pharmpy.workflows.ModelfitResults attribute) Infusion (class in pharmpy.model) init (pharmpy.model.Parameter attribute) initial_individual_estimates (pharmpy.model.Model attribute) inits (pharmpy.model.Parameters attribute) input (pharmpy.model.Compartment attribute) insert_workflow() (pharmpy.workflows.WorkflowBuilder method) interaction (pharmpy.model.EstimationStep attribute) internals (pharmpy.model.Model attribute) iov (pharmpy.model.RandomVariables attribute) is_categorical() (pharmpy.model.ColumnInfo method) is_integer() (pharmpy.model.ColumnInfo method) is_linearized() (in module pharmpy.modeling) is_numerical() (pharmpy.model.ColumnInfo method) is_real() (in module pharmpy.modeling) is_strictness_fulfilled() (in module pharmpy.tools) isample (pharmpy.model.EstimationStep attribute) J join() (pharmpy.model.RandomVariables method) JointNormalDistribution (class in pharmpy.model) K keep_every_nth_iter (pharmpy.model.EstimationStep attribute) L lag_time (pharmpy.model.Compartment attribute) laplace (pharmpy.model.EstimationStep attribute) latex_string() (pharmpy.model.Distribution method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.NormalDistribution method) level (pharmpy.model.Distribution attribute) (pharmpy.model.JointNormalDistribution attribute) (pharmpy.model.NormalDistribution attribute) levels (pharmpy.model.VariabilityHierarchy attribute) list_all_names() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) list_all_subcontexts() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) list_time_varying_covariates() (in module pharmpy.modeling) load_dataset() (in module pharmpy.modeling) load_example_model() (in module pharmpy.modeling) load_example_modelfit_results() (in module pharmpy.tools) LocalDirectoryContext (class in pharmpy.workflows) LocalDirectoryDatabase (class in pharmpy.workflows) LocalModelDirectoryDatabase (class in pharmpy.workflows) Log (class in pharmpy.workflows) log (pharmpy.workflows.ModelEntry attribute) (pharmpy.workflows.ModelfitResults attribute) log_error() (pharmpy.workflows.Context method) (pharmpy.workflows.Log method) log_info() (pharmpy.workflows.Context method) log_likelihood (pharmpy.workflows.ModelfitResults attribute) log_message() (pharmpy.workflows.Context method) log_warning() (pharmpy.workflows.Context method) (pharmpy.workflows.Log method) lower (pharmpy.model.Parameter attribute) (pharmpy.model.Parameters attribute) M make_declarative() (in module pharmpy.modeling) maximum_evaluations (pharmpy.model.EstimationStep attribute) mean (pharmpy.model.Distribution attribute) (pharmpy.model.JointNormalDistribution attribute) (pharmpy.model.NormalDistribution attribute) method (pharmpy.model.EstimationStep attribute) mfl pharmpy-run-modelsearch command line option minimization_successful (pharmpy.workflows.ModelfitResults attribute) minimization_successful_iterations (pharmpy.workflows.ModelfitResults attribute) missing_data_token (pharmpy.model.DataInfo attribute) Model (class in pharmpy.model) model (pharmpy.workflows.ModelEntry attribute) model_database (pharmpy.workflows.Context attribute) ModelDatabase (class in pharmpy.workflows) ModelEntry (class in pharmpy.workflows) ModelError modelfit_results (pharmpy.workflows.ModelEntry attribute) ModelfitResults (class in pharmpy.workflows) ModelfitResultsError ModelSyntaxError module pharmpy.model pharmpy.modeling pharmpy.tools pharmpy.workflows move_dose() (pharmpy.model.CompartmentalSystemBuilder method) mu_reference_model() (in module pharmpy.modeling) N n (pharmpy.model.SimulationStep attribute) name (pharmpy.model.ColumnInfo attribute) (pharmpy.model.Compartment attribute) (pharmpy.model.Model attribute) (pharmpy.model.Parameter attribute) (pharmpy.model.VariabilityLevel attribute) (pharmpy.workflows.Task attribute) (pharmpy.workflows.Workflow attribute) names (pharmpy.model.DataInfo attribute) (pharmpy.model.Distribution attribute) (pharmpy.model.JointNormalDistribution attribute) (pharmpy.model.NormalDistribution attribute) (pharmpy.model.Parameters attribute) (pharmpy.model.RandomVariables attribute) (pharmpy.model.VariabilityHierarchy attribute) nearest_valid_parameters() (pharmpy.model.RandomVariables method) niter (pharmpy.model.EstimationStep attribute) nonfixed (pharmpy.model.Parameters attribute) NormalDistribution (class in pharmpy.model) nrvs (pharmpy.model.RandomVariables attribute) NullModelDatabase (class in pharmpy.workflows) O observation_transformation (pharmpy.model.Model attribute) ode_system (pharmpy.model.Statements attribute) ofv (pharmpy.workflows.ModelfitResults attribute) ofv_iterations (pharmpy.workflows.ModelfitResults attribute) omit_data() (in module pharmpy.modeling) P Parameter (class in pharmpy.model) parameter_estimates (pharmpy.workflows.ModelfitResults attribute) parameter_estimates_iterations (pharmpy.workflows.ModelfitResults attribute) parameter_estimates_sdcorr (pharmpy.workflows.ModelfitResults attribute) parameter_names (pharmpy.model.Distribution attribute) (pharmpy.model.RandomVariables attribute) parameter_uncertainty_method (pharmpy.model.EstimationStep attribute) Parameters (class in pharmpy.model) parameters (pharmpy.model.Model attribute) parameters_sdcorr() (pharmpy.model.RandomVariables method) parent (pharmpy.workflows.ModelEntry attribute) parse_model() (pharmpy.model.Model static method) parse_model_from_string() (pharmpy.model.Model static method) path (pharmpy.model.DataInfo attribute) pharmpy command line option --help --version -h pharmpy-data command line option --help -h pharmpy-data-append command line option --force --help --output_file -f -h -o expression file pharmpy-data-deidentify command line option --datecols --force --help --idcol --output_file -f -h -o file pharmpy-data-filter command line option --force --help --output_file -f -h -o expressions file pharmpy-data-print command line option --columns --help -h file pharmpy-data-reference command line option --force --help --output_file -f -h -o colname file pharmpy-data-resample command line option --group --help --replace --resamples --sample_size --seed --stratify -h file pharmpy-data-write command line option --force --help --output_file -f -h -o file pharmpy-info command line option --help -h pharmpy-model command line option --help -h pharmpy-model-print command line option --explicit-odes --help -h file pharmpy-model-sample command line option --help --samples --seed -h file pharmpy-model-update_inits command line option --force --help --output_file -f -h -o file pharmpy-psn command line option --help -h pharmpy-psn-bootstrap command line option --help -h psn pharmpy-psn-cdd command line option --help -h psn pharmpy-psn-frem command line option --force_posdef_covmatrix --force_posdef_samples --help --method -h psn pharmpy-psn-linearize command line option --help -h psn pharmpy-psn-print command line option --help -h file pharmpy-psn-qa command line option --help -h psn pharmpy-psn-report command line option --help -h psn pharmpy-psn-ruvsearch command line option --help -h psn pharmpy-psn-scm command line option --help -h psn pharmpy-psn-simeval command line option --help -h psn pharmpy-results command line option --help -h pharmpy-results-summary command line option --help -h file pharmpy-run command line option --help -h pharmpy-run-allometry command line option --allometric_variable --help --initials --lower_bounds --non_fixed --parameters --path --reference_value --upper_bounds -h file pharmpy-run-amd command line option --administration --allometric_variable --b_init --cl_init --dv_types --ec50_init --emax_init --help --ignore_datainfo_fallback --lloq_limit --lloq_method --mat_init --mechanistic_covariates --met_init --modeltype --occasion --parameter_uncertainty_method --path --results --resume --retries_strategy --search_space --seed --strategy --strictness --vc_init -h file pharmpy-run-bootstrap command line option --help --samples -h file pharmpy-run-covsearch command line option --adaptive_scope_reduction --algorithm --help --max_eval --max_steps --naming_index_offset --p_backward --p_forward --path --search_space --strictness -h file pharmpy-run-estmethod command line option --help --methods --parameter_uncertainty_methods --path --solvers -h algorithm compare_ofv file pharmpy-run-execute command line option --help -h file pharmpy-run-iivsearch command line option --algorithm --correlation_algorithm --cutoff --e_p --e_q --help --iiv_strategy --keep --linearize --path --rank_type --strictness -h file pharmpy-run-iovsearch command line option --column --cutoff --distribution --e --help --list_of_parameters --path --rank_type --strictness -h file pharmpy-run-linearize command line option --help --path -h file pharmpy-run-modelsearch command line option --cutoff --e --help --iiv_strategy --path --rank_type --strictness -h algorithm file mfl pharmpy-run-ruvsearch command line option --dv --groups --help --max_iter --p_value --path --skip --strictness -h file pharmpy.model module pharmpy.modeling module pharmpy.tools module pharmpy.workflows module plot_abs_cwres_vs_ipred() (in module pharmpy.modeling) plot_cwres_vs_idv() (in module pharmpy.modeling) plot_dask() (pharmpy.workflows.Workflow method) plot_dv_vs_ipred() (in module pharmpy.modeling) plot_dv_vs_pred() (in module pharmpy.modeling) plot_eta_distributions() (in module pharmpy.modeling) plot_individual_predictions() (in module pharmpy.modeling) plot_iofv_vs_iofv() (in module pharmpy.modeling) plot_transformed_eta_distributions() (in module pharmpy.modeling) plot_vpc() (in module pharmpy.modeling) precision_matrix (pharmpy.workflows.ModelfitResults attribute) predict_influential_individuals() (in module pharmpy.tools) predict_influential_outliers() (in module pharmpy.tools) predict_outliers() (in module pharmpy.tools) predictions (pharmpy.model.EstimationStep attribute) (pharmpy.workflows.ModelfitResults attribute) print_fit_summary() (in module pharmpy.tools) print_model_code() (in module pharmpy.modeling) print_model_symbols() (in module pharmpy.modeling) psn pharmpy-psn-bootstrap command line option pharmpy-psn-cdd command line option pharmpy-psn-frem command line option pharmpy-psn-linearize command line option pharmpy-psn-qa command line option pharmpy-psn-report command line option pharmpy-psn-ruvsearch command line option pharmpy-psn-scm command line option pharmpy-psn-simeval command line option R random_variables (pharmpy.model.Model attribute) RandomVariables (class in pharmpy.model) rate (pharmpy.model.Infusion attribute) read_dataset_from_datainfo() (in module pharmpy.modeling) read_json() (pharmpy.model.DataInfo static method) read_model() (in module pharmpy.modeling) read_model_from_string() (in module pharmpy.modeling) read_modelfit_results() (in module pharmpy.tools) read_results() (in module pharmpy.tools) reassign() (pharmpy.model.Statements method) reference (pharmpy.model.VariabilityLevel attribute) relative_standard_errors (pharmpy.workflows.ModelfitResults attribute) remove_bioavailability() (in module pharmpy.modeling) remove_compartment() (pharmpy.model.CompartmentalSystemBuilder method) remove_covariate_effect() (in module pharmpy.modeling) remove_derivative() (in module pharmpy.modeling) remove_dose() (pharmpy.model.CompartmentalSystemBuilder method) remove_error_model() (in module pharmpy.modeling) remove_estimation_step() (in module pharmpy.modeling) remove_flow() (pharmpy.model.CompartmentalSystemBuilder method) remove_iiv() (in module pharmpy.modeling) remove_iov() (in module pharmpy.modeling) remove_lag_time() (in module pharmpy.modeling) remove_loq_data() (in module pharmpy.modeling) remove_parameter_uncertainty_step() (in module pharmpy.modeling) remove_peripheral_compartment() (in module pharmpy.modeling) remove_predictions() (in module pharmpy.modeling) remove_residuals() (in module pharmpy.modeling) remove_symbol_definitions() (pharmpy.model.Statements method) remove_unused_parameters_and_rvs() (in module pharmpy.modeling) rename_symbols() (in module pharmpy.modeling) replace() (pharmpy.model.Assignment method) (pharmpy.model.Bolus method) (pharmpy.model.ColumnInfo method) (pharmpy.model.Compartment method) (pharmpy.model.CompartmentalSystem method) (pharmpy.model.DataInfo method) (pharmpy.model.Distribution method) (pharmpy.model.EstimationStep method) (pharmpy.model.ExecutionSteps method) (pharmpy.model.Infusion method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.Model method) (pharmpy.model.NormalDistribution method) (pharmpy.model.Parameter method) (pharmpy.model.Parameters method) (pharmpy.model.RandomVariables method) (pharmpy.model.SimulationStep method) (pharmpy.model.VariabilityHierarchy method) (pharmpy.model.VariabilityLevel method) (pharmpy.workflows.Task method) (pharmpy.workflows.Workflow method) replace_fixed_thetas() (in module pharmpy.modeling) replace_non_random_rvs() (in module pharmpy.modeling) replace_task() (pharmpy.workflows.WorkflowBuilder method) replace_with_sympy_rvs() (pharmpy.model.RandomVariables method) resample_data() (in module pharmpy.modeling) residuals (pharmpy.model.EstimationStep attribute) (pharmpy.workflows.ModelfitResults attribute) Results (class in pharmpy.workflows) retrieve_annotation() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) retrieve_common_options() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) retrieve_file() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) retrieve_final_model_entry() (pharmpy.workflows.Context method) retrieve_input_model_entry() (pharmpy.workflows.Context method) retrieve_key() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) retrieve_local_files() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) retrieve_log() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) retrieve_metadata() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) retrieve_model() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) retrieve_model_entry() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) retrieve_modelfit_results() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) retrieve_models() (in module pharmpy.tools) retrieve_name() (pharmpy.workflows.LocalDirectoryContext method) retrieve_results() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) rhs_symbols (pharmpy.model.Assignment attribute) (pharmpy.model.CompartmentalSystem attribute) (pharmpy.model.Statement attribute) run_allometry() (in module pharmpy.tools) run_amd() (in module pharmpy.tools) run_bootstrap() (in module pharmpy.tools) run_covsearch() (in module pharmpy.tools) run_estmethod() (in module pharmpy.tools) run_iivsearch() (in module pharmpy.tools) run_iovsearch() (in module pharmpy.tools) run_linearize() (in module pharmpy.tools) run_modelfit() (in module pharmpy.tools) run_modelsearch() (in module pharmpy.tools) run_retries() (in module pharmpy.tools) run_ruvsearch() (in module pharmpy.tools) run_simulation() (in module pharmpy.tools) run_structsearch() (in module pharmpy.tools) run_tool() (in module pharmpy.tools) runtime_total (pharmpy.workflows.ModelfitResults attribute) S sample() (pharmpy.model.RandomVariables method) sample_individual_estimates() (in module pharmpy.modeling) sample_parameters_from_covariance_matrix() (in module pharmpy.modeling) sample_parameters_uniformly() (in module pharmpy.modeling) scale (pharmpy.model.ColumnInfo attribute) seed (pharmpy.model.SimulationStep attribute) separator (pharmpy.model.DataInfo attribute) set_additive_error_model() (in module pharmpy.modeling) set_baseline_effect() (in module pharmpy.modeling) set_bioavailability() (pharmpy.model.CompartmentalSystemBuilder method) set_column() (pharmpy.model.DataInfo method) set_combined_error_model() (in module pharmpy.modeling) set_covariates() (in module pharmpy.modeling) set_dataset() (in module pharmpy.modeling) set_description() (in module pharmpy.modeling) set_direct_effect() (in module pharmpy.modeling) set_dose() (pharmpy.model.CompartmentalSystemBuilder method) set_dtbs_error_model() (in module pharmpy.modeling) set_dv_column() (pharmpy.model.DataInfo method) set_dvid() (in module pharmpy.modeling) set_estimation_step() (in module pharmpy.modeling) set_evaluation_step() (in module pharmpy.modeling) set_first_order_absorption() (in module pharmpy.modeling) set_first_order_elimination() (in module pharmpy.modeling) set_fix() (pharmpy.model.Parameters method) set_id_column() (pharmpy.model.DataInfo method) set_idv_column() (pharmpy.model.DataInfo method) set_iiv_on_ruv() (in module pharmpy.modeling) set_initial_condition() (in module pharmpy.modeling) set_initial_estimates() (in module pharmpy.modeling) (pharmpy.model.Parameters method) set_input() (pharmpy.model.CompartmentalSystemBuilder method) set_instantaneous_absorption() (in module pharmpy.modeling) set_lag_time() (pharmpy.model.CompartmentalSystemBuilder method) set_lloq_data() (in module pharmpy.modeling) set_lower_bounds() (in module pharmpy.modeling) set_michaelis_menten_elimination() (in module pharmpy.modeling) set_mixed_mm_fo_elimination() (in module pharmpy.modeling) set_name() (in module pharmpy.modeling) set_ode_solver() (in module pharmpy.modeling) set_peripheral_compartments() (in module pharmpy.modeling) set_power_on_ruv() (in module pharmpy.modeling) set_proportional_error_model() (in module pharmpy.modeling) set_reference_values() (in module pharmpy.modeling) set_seq_zo_fo_absorption() (in module pharmpy.modeling) set_simulation() (in module pharmpy.modeling) set_time_varying_error_model() (in module pharmpy.modeling) set_tmdd() (in module pharmpy.modeling) set_transit_compartments() (in module pharmpy.modeling) set_types() (pharmpy.model.DataInfo method) set_upper_bounds() (in module pharmpy.modeling) set_weighted_error_model() (in module pharmpy.modeling) set_zero_order_absorption() (in module pharmpy.modeling) set_zero_order_elimination() (in module pharmpy.modeling) set_zero_order_input() (in module pharmpy.modeling) significant_digits (pharmpy.workflows.ModelfitResults attribute) significant_digits_iterations (pharmpy.workflows.ModelfitResults attribute) simplify_expression() (in module pharmpy.modeling) simulation_results (pharmpy.workflows.ModelEntry attribute) SimulationResults (class in pharmpy.workflows) SimulationStep (class in pharmpy.model) snapshot() (pharmpy.workflows.LocalModelDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) solve_ode_system() (in module pharmpy.modeling) split_common_options() (in module pharmpy.workflows) split_joint_distribution() (in module pharmpy.modeling) standard_errors (pharmpy.workflows.ModelfitResults attribute) standard_errors_sdcorr (pharmpy.workflows.ModelfitResults attribute) Statement (class in pharmpy.model) Statements (class in pharmpy.model) statements (pharmpy.model.Model attribute) store_annotation() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) store_final_model_entry() (pharmpy.workflows.Context method) store_input_model_entry() (pharmpy.workflows.Context method) store_key() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) store_local_file() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) store_message() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) store_metadata() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) store_model() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) store_model_entry() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) store_modelfit_results() (pharmpy.workflows.LocalDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) (pharmpy.workflows.NullModelDatabase method) store_results() (pharmpy.workflows.Context method) (pharmpy.workflows.LocalDirectoryContext method) subs() (pharmpy.model.Assignment method) (pharmpy.model.Bolus method) (pharmpy.model.Compartment method) (pharmpy.model.CompartmentalSystem method) (pharmpy.model.Distribution method) (pharmpy.model.Infusion method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.NormalDistribution method) (pharmpy.model.RandomVariables method) (pharmpy.model.Statement method) (pharmpy.model.Statements method) summarize_modelfit_results() (in module pharmpy.tools) supported_methods (pharmpy.model.EstimationStep attribute) supported_parameter_uncertainty_methods (pharmpy.model.EstimationStep attribute) symbol (pharmpy.model.Assignment attribute) (pharmpy.model.Parameter attribute) symbols (pharmpy.model.Parameters attribute) (pharmpy.model.RandomVariables attribute) T t (pharmpy.model.CompartmentalSystem attribute) table (pharmpy.workflows.SimulationResults attribute) Task (class in pharmpy.workflows) task_input (pharmpy.workflows.Task attribute) termination_cause (pharmpy.workflows.ModelfitResults attribute) termination_cause_iterations (pharmpy.workflows.ModelfitResults attribute) to_compartmental_system() (in module pharmpy.model) to_csv() (pharmpy.workflows.Results method) to_dataframe() (pharmpy.model.ExecutionSteps method) (pharmpy.model.Parameters method) (pharmpy.workflows.Log method) to_dict() (pharmpy.model.Assignment method) (pharmpy.model.Bolus method) (pharmpy.model.ColumnInfo method) (pharmpy.model.Compartment method) (pharmpy.model.CompartmentalSystem method) (pharmpy.model.DataInfo method) (pharmpy.model.Distribution method) (pharmpy.model.EstimationStep method) (pharmpy.model.ExecutionSteps method) (pharmpy.model.Infusion method) (pharmpy.model.JointNormalDistribution method) (pharmpy.model.Model method) (pharmpy.model.NormalDistribution method) (pharmpy.model.Parameter method) (pharmpy.model.Parameters method) (pharmpy.model.RandomVariables method) (pharmpy.model.SimulationStep method) (pharmpy.model.Statements method) (pharmpy.model.VariabilityHierarchy method) (pharmpy.model.VariabilityLevel method) (pharmpy.workflows.Log method) (pharmpy.workflows.Results method) to_json() (pharmpy.model.DataInfo method) (pharmpy.workflows.Results method) tool_options (pharmpy.model.EstimationStep attribute) transaction() (pharmpy.workflows.LocalModelDirectoryDatabase method) (pharmpy.workflows.ModelDatabase method) transform_blq() (in module pharmpy.modeling) transform_etas_boxcox() (in module pharmpy.modeling) transform_etas_john_draper() (in module pharmpy.modeling) transform_etas_tdist() (in module pharmpy.modeling) translate_nmtran_time() (in module pharmpy.modeling) type (pharmpy.model.ColumnInfo attribute) typeix (pharmpy.model.DataInfo attribute) types (pharmpy.model.DataInfo attribute) U unconstrain_parameters() (in module pharmpy.modeling) undrop_columns() (in module pharmpy.modeling) unfix_parameters() (in module pharmpy.modeling) unfix_parameters_to() (in module pharmpy.modeling) unit (pharmpy.model.ColumnInfo attribute) unjoin() (pharmpy.model.RandomVariables method) unload_dataset() (in module pharmpy.modeling) update_initial_individual_estimates() (in module pharmpy.modeling) update_source() (pharmpy.model.Model method) upper (pharmpy.model.Parameter attribute) (pharmpy.model.Parameters attribute) use_thetas_for_error_stdev() (in module pharmpy.modeling) V validate_parameters() (pharmpy.model.RandomVariables method) value_type (pharmpy.model.Model attribute) VariabilityHierarchy (class in pharmpy.model) VariabilityLevel (class in pharmpy.model) variance (pharmpy.model.Distribution attribute) (pharmpy.model.JointNormalDistribution attribute) (pharmpy.model.NormalDistribution attribute) variance_parameters (pharmpy.model.RandomVariables attribute) W warnings (pharmpy.workflows.Log attribute) (pharmpy.workflows.ModelfitResults attribute) Workflow (class in pharmpy.workflows) WorkflowBuilder (class in pharmpy.workflows) write_csv() (in module pharmpy.modeling) write_files() (pharmpy.model.Model method) write_model() (in module pharmpy.modeling) write_results() (in module pharmpy.tools) Z zero_order_inputs (pharmpy.model.CompartmentalSystem attribute)
