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Section Navigation
Model
get_and_check_dataset
get_and_check_odes
to_compartmental_system
Assignment
Bolus
ColumnInfo
Compartment
CompartmentalSystem
CompartmentalSystemBuilder
DataInfo
DatasetError
DatasetWarning
DataVariable
Distribution
EstimationStep
ExecutionSteps
FiniteDistribution
Infusion
JointNormalDistribution
Model
ModelError
ModelfitResultsError
ModelSyntaxError
NormalDistribution
Parameter
Parameters
RandomVariables
SimulationStep
Statement
Statements
VariabilityHierarchy
VariabilityLevel
Modeling
pharmpy.modeling.bump_model_number
pharmpy.modeling.convert_model
pharmpy.modeling.create_config_template
pharmpy.modeling.filter_dataset
pharmpy.modeling.get_config_path
pharmpy.modeling.get_model_code
pharmpy.modeling.get_model_covariates
pharmpy.modeling.get_nested_model
pharmpy.modeling.load_example_model
pharmpy.modeling.print_model_code
pharmpy.modeling.print_model_symbols
pharmpy.modeling.read_model
pharmpy.modeling.read_model_from_string
pharmpy.modeling.remove_unused_parameters_and_rvs
pharmpy.modeling.rename_symbols
pharmpy.modeling.set_description
pharmpy.modeling.set_name
pharmpy.modeling.write_csv
pharmpy.modeling.write_dataset
pharmpy.modeling.write_model
pharmpy.modeling.create_basic_kpd_model
pharmpy.modeling.create_basic_pd_model
pharmpy.modeling.create_basic_pk_model
pharmpy.modeling.add_admid
pharmpy.modeling.add_cmt
pharmpy.modeling.add_time_after_dose
pharmpy.modeling.add_time_of_last_dose
pharmpy.modeling.bin_observations
pharmpy.modeling.binarize_dataset
pharmpy.modeling.deidentify_data
pharmpy.modeling.drop_columns
pharmpy.modeling.drop_dropped_columns
pharmpy.modeling.expand_additional_doses
pharmpy.modeling.is_binary
pharmpy.modeling.load_dataset
pharmpy.modeling.read_dataset_from_datainfo
pharmpy.modeling.remove_loq_data
pharmpy.modeling.remove_unused_columns
pharmpy.modeling.set_covariates
pharmpy.modeling.set_dataset
pharmpy.modeling.set_dvid
pharmpy.modeling.set_lloq_data
pharmpy.modeling.set_reference_values
pharmpy.modeling.translate_nmtran_time
pharmpy.modeling.undrop_columns
pharmpy.modeling.unload_dataset
pharmpy.modeling.calculate_summary_statistic
pharmpy.modeling.check_dataset
pharmpy.modeling.get_admid
pharmpy.modeling.get_baselines
pharmpy.modeling.get_cmt
pharmpy.modeling.get_column_name
pharmpy.modeling.get_concentration_parameters_from_data
pharmpy.modeling.get_covariate_baselines
pharmpy.modeling.get_doseid
pharmpy.modeling.get_doses
pharmpy.modeling.get_evid
pharmpy.modeling.get_ids
pharmpy.modeling.get_mdv
pharmpy.modeling.get_number_of_individuals
pharmpy.modeling.get_number_of_observations
pharmpy.modeling.get_number_of_observations_per_individual
pharmpy.modeling.get_observations
pharmpy.modeling.get_unit_of
pharmpy.modeling.infer_datatypes
pharmpy.modeling.list_time_varying_covariates
pharmpy.modeling.add_population_parameter
pharmpy.modeling.fix_or_unfix_parameters
pharmpy.modeling.fix_parameters
pharmpy.modeling.fix_parameters_to
pharmpy.modeling.get_omegas
pharmpy.modeling.get_sigmas
pharmpy.modeling.get_thetas
pharmpy.modeling.map_eta_parameters
pharmpy.modeling.replace_fixed_thetas
pharmpy.modeling.set_initial_estimates
pharmpy.modeling.set_lower_bounds
pharmpy.modeling.set_upper_bounds
pharmpy.modeling.unconstrain_parameters
pharmpy.modeling.unfix_parameters
pharmpy.modeling.unfix_parameters_to
pharmpy.modeling.add_iiv
pharmpy.modeling.add_iov
pharmpy.modeling.add_pd_iiv
pharmpy.modeling.add_pk_iiv
pharmpy.modeling.create_joint_distribution
pharmpy.modeling.remove_iiv
pharmpy.modeling.remove_iov
pharmpy.modeling.split_joint_distribution
pharmpy.modeling.transform_etas_boxcox
pharmpy.modeling.transform_etas_john_draper
pharmpy.modeling.transform_etas_tdist
pharmpy.modeling.update_initial_individual_estimates
pharmpy.modeling.replace_non_random_rvs
pharmpy.modeling.add_allometry
pharmpy.modeling.add_covariate_effect
pharmpy.modeling.get_covariate_effects
pharmpy.modeling.has_covariate_effect
pharmpy.modeling.remove_covariate_effect
pharmpy.modeling.has_additive_error_model
pharmpy.modeling.has_combined_error_model
pharmpy.modeling.has_proportional_error_model
pharmpy.modeling.has_weighted_error_model
pharmpy.modeling.remove_error_model
pharmpy.modeling.set_additive_error_model
pharmpy.modeling.set_combined_error_model
pharmpy.modeling.set_dtbs_error_model
pharmpy.modeling.set_iiv_on_ruv
pharmpy.modeling.set_power_on_ruv
pharmpy.modeling.set_proportional_error_model
pharmpy.modeling.set_time_varying_error_model
pharmpy.modeling.set_weighted_error_model
pharmpy.modeling.transform_blq
pharmpy.modeling.use_thetas_for_error_stdev
pharmpy.modeling.add_bioavailability
pharmpy.modeling.add_individual_parameter
pharmpy.modeling.add_lag_time
pharmpy.modeling.add_peripheral_compartment
pharmpy.modeling.find_clearance_parameters
pharmpy.modeling.find_volume_parameters
pharmpy.modeling.get_bioavailability
pharmpy.modeling.get_central_volume_and_clearance
pharmpy.modeling.get_lag_times
pharmpy.modeling.get_number_of_peripheral_compartments
pharmpy.modeling.get_number_of_transit_compartments
pharmpy.modeling.has_first_order_absorption
pharmpy.modeling.has_first_order_elimination
pharmpy.modeling.has_instantaneous_absorption
pharmpy.modeling.has_michaelis_menten_elimination
pharmpy.modeling.has_mixed_mm_fo_elimination
pharmpy.modeling.has_seq_zo_fo_absorption
pharmpy.modeling.has_weibull_absorption
pharmpy.modeling.has_zero_order_absorption
pharmpy.modeling.has_zero_order_elimination
pharmpy.modeling.remove_bioavailability
pharmpy.modeling.remove_lag_time
pharmpy.modeling.remove_peripheral_compartment
pharmpy.modeling.set_first_order_absorption
pharmpy.modeling.set_first_order_elimination
pharmpy.modeling.set_instantaneous_absorption
pharmpy.modeling.set_michaelis_menten_elimination
pharmpy.modeling.set_mixed_mm_fo_elimination
pharmpy.modeling.set_n_transit_compartments
pharmpy.modeling.set_peripheral_compartments
pharmpy.modeling.set_seq_zo_fo_absorption
pharmpy.modeling.set_transit_compartments
pharmpy.modeling.set_weibull_absorption
pharmpy.modeling.set_zero_order_absorption
pharmpy.modeling.set_zero_order_elimination
pharmpy.modeling.add_effect_compartment
pharmpy.modeling.add_indirect_effect
pharmpy.modeling.add_placebo_model
pharmpy.modeling.set_baseline_effect
pharmpy.modeling.set_direct_effect
pharmpy.modeling.add_metabolite
pharmpy.modeling.has_presystemic_metabolite
pharmpy.modeling.set_tmdd
pharmpy.modeling.display_odes
pharmpy.modeling.get_initial_conditions
pharmpy.modeling.get_zero_order_inputs
pharmpy.modeling.has_linear_odes
pharmpy.modeling.has_linear_odes_with_real_eigenvalues
pharmpy.modeling.has_odes
pharmpy.modeling.set_initial_condition
pharmpy.modeling.set_ode_solver
pharmpy.modeling.set_zero_order_input
pharmpy.modeling.solve_ode_system
pharmpy.modeling.add_derivative
pharmpy.modeling.add_estimation_step
pharmpy.modeling.add_parameter_uncertainty_step
pharmpy.modeling.add_predictions
pharmpy.modeling.add_residuals
pharmpy.modeling.append_estimation_step_options
pharmpy.modeling.is_simulation_model
pharmpy.modeling.remove_derivative
pharmpy.modeling.remove_estimation_step
pharmpy.modeling.remove_parameter_uncertainty_step
pharmpy.modeling.remove_predictions
pharmpy.modeling.remove_residuals
pharmpy.modeling.set_estimation_step
pharmpy.modeling.set_evaluation_step
pharmpy.modeling.set_simulation
pharmpy.modeling.calculate_aic
pharmpy.modeling.calculate_bic
pharmpy.modeling.calculate_eta_shrinkage
pharmpy.modeling.calculate_individual_parameter_statistics
pharmpy.modeling.calculate_individual_shrinkage
pharmpy.modeling.calculate_pk_parameters_statistics
pharmpy.modeling.check_high_correlations
pharmpy.modeling.check_parameters_near_bounds
pharmpy.modeling.insert_ebes_into_dataset
pharmpy.modeling.plot_abs_cwres_vs_ipred
pharmpy.modeling.plot_cwres_vs_idv
pharmpy.modeling.plot_dv_vs_ipred
pharmpy.modeling.plot_dv_vs_pred
pharmpy.modeling.plot_eta_distributions
pharmpy.modeling.plot_individual_predictions
pharmpy.modeling.plot_iofv_vs_iofv
pharmpy.modeling.plot_transformed_eta_distributions
pharmpy.modeling.plot_vpc
pharmpy.modeling.create_rng
pharmpy.modeling.sample_individual_estimates
pharmpy.modeling.sample_parameters_from_covariance_matrix
pharmpy.modeling.sample_parameters_uniformly
pharmpy.modeling.calculate_epsilon_gradient_expression
pharmpy.modeling.calculate_eta_gradient_expression
pharmpy.modeling.cholesky_decompose
pharmpy.modeling.cleanup_model
pharmpy.modeling.create_symbol
pharmpy.modeling.get_dv_symbol
pharmpy.modeling.get_individual_parameters
pharmpy.modeling.get_individual_prediction_expression
pharmpy.modeling.get_mu_connected_to_parameter
pharmpy.modeling.get_observation_expression
pharmpy.modeling.get_parameter_rv
pharmpy.modeling.get_pd_parameters
pharmpy.modeling.get_pk_parameters
pharmpy.modeling.get_population_prediction_expression
pharmpy.modeling.get_rv_parameters
pharmpy.modeling.greekify_model
pharmpy.modeling.has_mu_reference
pharmpy.modeling.has_random_effect
pharmpy.modeling.is_linearized
pharmpy.modeling.is_real
pharmpy.modeling.make_declarative
pharmpy.modeling.mu_reference_model
pharmpy.modeling.simplify_expression
pharmpy.modeling.calculate_parameters_from_ucp
pharmpy.modeling.calculate_ucp_scale
pharmpy.modeling.evaluate_epsilon_gradient
pharmpy.modeling.evaluate_eta_gradient
pharmpy.modeling.evaluate_expression
pharmpy.modeling.evaluate_individual_prediction
pharmpy.modeling.evaluate_population_prediction
pharmpy.modeling.evaluate_weighted_residuals
pharmpy.modeling.calculate_corr_from_cov
pharmpy.modeling.calculate_corr_from_prec
pharmpy.modeling.calculate_cov_from_corrse
pharmpy.modeling.calculate_cov_from_prec
pharmpy.modeling.calculate_prec_from_corrse
pharmpy.modeling.calculate_prec_from_cov
pharmpy.modeling.calculate_se_from_cov
pharmpy.modeling.calculate_se_from_prec
pharmpy.modeling.omit_data
pharmpy.modeling.resample_data
Tools
broadcast_log
create_report
export_model_files
fit
open_context
is_strictness_fulfilled
load_example_modelfit_results
list_models
predict_influential_individuals
predict_influential_outliers
predict_outliers
print_fit_summary
print_log
read_results
read_modelfit_results
retrieve_model
retrieve_modelfit_results
retrieve_models
run_allometry
run_amd
run_bootstrap
run_covsearch
run_estmethod
run_iivsearch
run_iovsearch
run_linearize
run_modelfit
run_modelrank
run_modelsearch
run_pdsearch
run_qa
run_retries
run_ruvsearch
run_structsearch
run_tool
run_simulation
run_vpc
summarize_modelfit_results
write_results
Workflows
execute_subtool
execute_workflow
split_common_options
DispatchingError
LocalDirectoryDatabase
LocalModelDirectoryDatabase
LocalDirectoryContext
Log
NullModelDatabase
ModelDatabase
ModelEntry
ModelfitResults
Results
SimulationResults
Task
Context
Workflow
WorkflowBuilder
API Reference
Workflows
execute_subtool
execute_subtool
#
pharmpy.workflows.
execute_subtool
(
workflow
,
context
)
[source]
#
On this page
execute_subtool()
