pharmpy.tools Package

Functions

create_report(results, path)	Create standard report for results
fit(model_or_models[, esttool, path, context])	Fit models.
is_strictness_fulfilled(model, results, ...)	Takes a ModelfitResults object and a statement as input and returns True/False if the evaluation of the statement is True/False.
load_example_modelfit_results(name)	Load the modelfit results of an example model
predict_influential_individuals(model, results)	Predict influential individuals for a model using a machine learning model.
predict_influential_outliers(model, results)	Predict influential outliers for a model using a machine learning model.
predict_outliers(model, results[, cutoff])	Predict outliers for a model using a machine learning model.
print_fit_summary(model, modelfit_results)	Print a summary of the model fit
read_results(path)	Read results object from file
read_modelfit_results(path[, esttool])	Read results from external tool for a model
retrieve_models(source[, names])	Retrieve models after a tool run
run_allometry([model, results, ...])	Run allometry tool.
run_amd(input[, results, modeltype, ...])	Run Automatic Model Development (AMD) tool
run_bootstrap(model[, results, resamples])	Run bootstrap tool
run_covsearch(search_space[, p_forward, ...])	Run COVsearch tool.
run_estmethod(algorithm[, methods, solvers, ...])	Run estmethod tool.
run_iivsearch([algorithm, iiv_strategy, ...])	Run IIVsearch tool.
run_iovsearch([column, list_of_parameters, ...])	Run IOVsearch tool.
run_linearize([model, results, model_name, ...])	Linearize a model
run_modelfit([model_or_models, n])	Run modelfit tool.
run_modelsearch(search_space, algorithm[, ...])	Run Modelsearch tool.
run_retries([model, results, ...])	Run retries tool.
run_ruvsearch([model, results, groups, ...])	Run the ruvsearch tool.
run_structsearch(type, model, results[, ...])	Run the structsearch tool.
run_tool(name, *args, **kwargs)	Run tool workflow
run_simulation([model])	Run the simulation tool.
summarize_modelfit_results(context[, ...])	Summarize results of model runs
write_results(results, path[, compression, csv])	Write results object to json (or csv) file