get_covariate_baselines

pharmpy.modeling.get_covariate_baselines(model)

Return a dataframe with baselines of all covariates for each id.

Baseline is taken to be the first row even if that has a missing value.

Parameters:

model (Model) – Pharmpy model

Returns:

pd.DataFrame – covariate baselines

See also

get_baselines

baselines for all data columns

Example

>>> from pharmpy.modeling import load_example_model, get_covariate_baselines, set_covariates
>>> model = load_example_model("pheno")
>>> model = set_covariates(model, ["WGT", "APGR"])
>>> get_covariate_baselines(model)
    WGT  APGR
ID
1   1.4   7.0
2   1.5   9.0
3   1.5   6.0
4   0.9   6.0
5   1.4   7.0
6   1.2   5.0
7   1.0   5.0
8   1.2   7.0
9   1.4   8.0
10  1.4   7.0
11  1.2   7.0
12  1.3   6.0
13  1.1   6.0
14  1.1   7.0
15  1.3   7.0
16  1.2   9.0
17  1.1   5.0
18  1.0   5.0
19  1.0   1.0
20  1.2   6.0
21  1.8   7.0
22  1.5   8.0
23  3.1   3.0
24  3.2   2.0
25  0.7   1.0
26  3.5   9.0
27  1.9   5.0
28  3.2   9.0
29  1.0   7.0
30  1.8   8.0
31  1.4   8.0
32  3.6   9.0
33  1.7   8.0
34  1.7   4.0
35  2.5   5.0
36  1.5   5.0
37  1.2   9.0
38  1.3   8.0
39  1.9  10.0
40  1.1   3.0
41  1.7   7.0
42  2.8   9.0
43  0.9   1.0
44  1.4   7.0
45  0.8   2.0
46  1.1   8.0
47  2.6   9.0
48  0.7   8.0
49  1.3   8.0
50  1.1   6.0
51  0.9   9.0
52  0.9   7.0
53  1.7   8.0
54  1.8   8.0
55  1.1   4.0
56  0.6   4.0
57  2.1   6.0
58  1.4   8.0
59  1.1   6.0