pharmpy.workflows Package

Options for the data module

Option name	Default value	Type	Description
default_dispatcher	pharmpy.workflows.local_dask	str	Name of default dispatcher module
default_model_database	pharmpy.workflows.LocalDirectoryDatabase	str	Name of default model database class
default_tool_database	pharmpy.workflows.LocalDirectoryToolDatabase	str	Name of default tool database class

Functions

call_workflow(wf, unique_name, db)	Dynamically call a workflow from another workflow.
execute_workflow(workflow[, dispatcher, ...])	Execute workflow
split_common_options(d)	Split the dict into common options and other options

Classes

default_model_database	alias of LocalDirectoryDatabase
default_tool_database	alias of LocalDirectoryToolDatabase
LocalDirectoryDatabase([path, file_extension])	ModelDatabase implementation for single local directory
LocalModelDirectoryDatabase([path, ...])	ModelDatabase implementation for a local directory structure
LocalDirectoryToolDatabase([toolname, path, ...])	ToolDatabase in a local directory
Log([entries])	Timestamped error and warning log
NullModelDatabase(**kwargs)	Dummy model database implementation
NullToolDatabase(toolname, **kwargs)	Dummy tool database
ModelDatabase()	Baseclass for databases for models and results of model runs
ModelEntry(model[, parent, ...])	Model with different modelfit related attributes.
ModelfitResults([__version__, name, ...])	Base class for results from a modelfit operation
Results([__version__])	Base class for all result classes
SimulationResults([__version__, name, ...])	Base class for resutls from simulation operation
Task(name, function, *task_input)	One task in a workflow
ToolDatabase(toolname)	Database of results, metadata and run files for one tool run
Workflow([builder, graph, name])	Workflow class
WorkflowBuilder([workflow, tasks, name])	Builder class for Workflow