pharmpy Package

Pharmpy

Pharmpy is a python package for pharmacometrics modeling.

Definitions

Functions

sympify(expr)

Classes

Assignment(symbol, expression)	Representation of variable assignment
Bolus(amount)	A Bolus dose
ColumnInfo(name[, type, unit, scale, ...])	Information about one data column
Compartment(name[, dose, lag_time, ...])	Compartment for a compartmental system
CompartmentalSystem(builder)	System of ODEs descibed as a compartmental system
CompartmentalSystemBuilder([cs])	Builder for CompartmentalSystem
DataInfo([columns, path, separator])	Metadata for the dataset
DatasetError	Exception for errors in the dataset
DatasetWarning	Warning for recoverable issues in the dataset
EstimationStep(method[, interaction, cov, ...])	Definition of one estimation operation
EstimationSteps([steps])	A sequence of estimation steps
ExplicitODESystem(odes, ics)	System of ODEs described explicitly
Infusion(amount[, rate, duration])	An infusion dose
Model()	The Pharmpy model class
ModelError	Exception for errors in model object
ModelfitResultsError	Exception for issues with ModelfitResults
Statements([statements])	A sequence of symbolic statements describing the model
ModelSyntaxError([msg])	Exception for Syntax errors in model code
ODESystem()	Abstract base class for ODE systems of different forms
Parameter(name, init[, lower, upper, fix])	A single parameter
Parameters([params])	An immutable collection of parameters
RandomVariable(name, level[, sympy_rv])	A single random variable
RandomVariables([rvs])	A collection of random variables
Results()	Base class for all result classes
VariabilityHierarchy([levels])	Description of a variability hierarchy