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Section Navigation
pharmpy Package
sympify
Assignment
Bolus
ColumnInfo
Compartment
CompartmentalSystem
CompartmentalSystemBuilder
DataInfo
DatasetError
DatasetWarning
EstimationStep
EstimationSteps
ExplicitODESystem
Infusion
Model
ModelError
ModelfitResultsError
Statements
ModelSyntaxError
ODESystem
Parameter
Parameters
RandomVariable
RandomVariables
Results
VariabilityHierarchy
pharmpy.modeling Package
add_allometry
add_covariance_step
add_covariate_effect
add_estimation_step
add_iiv
add_individual_parameter
add_iov
add_lag_time
add_peripheral_compartment
add_pk_iiv
add_population_parameter
add_time_after_dose
append_estimation_step_options
bump_model_number
calculate_aic
calculate_bic
calculate_corr_from_cov
calculate_corr_from_inf
calculate_cov_from_corrse
calculate_cov_from_inf
calculate_epsilon_gradient_expression
calculate_eta_gradient_expression
calculate_eta_shrinkage
calculate_individual_parameter_statistics
calculate_individual_shrinkage
calculate_inf_from_corrse
calculate_inf_from_cov
calculate_parameters_from_ucp
calculate_pk_parameters_statistics
calculate_se_from_cov
calculate_se_from_inf
calculate_ucp_scale
check_dataset
check_high_correlations
check_parameters_near_bounds
cleanup_model
convert_model
copy_model
create_joint_distribution
create_report
create_rng
create_symbol
drop_columns
drop_dropped_columns
evaluate_epsilon_gradient
evaluate_eta_gradient
evaluate_expression
evaluate_individual_prediction
evaluate_population_prediction
evaluate_weighted_residuals
expand_additional_doses
find_clearance_parameters
find_volume_parameters
fix_or_unfix_parameters
fix_parameters
fix_parameters_to
generate_model_code
get_baselines
get_bioavailability
get_cmt
get_concentration_parameters_from_data
get_config_path
get_covariate_baselines
get_doses
get_doseid
get_evid
get_ids
get_individual_parameters
get_individual_prediction_expression
get_lag_times
get_mdv
get_model_covariates
get_number_of_individuals
get_number_of_observations
get_number_of_observations_per_individual
get_omegas
get_observations
get_observation_expression
get_pk_parameters
get_population_prediction_expression
get_sigmas
get_thetas
get_unit_of
greekify_model
has_additive_error_model
has_combined_error_model
has_first_order_elimination
has_michaelis_menten_elimination
has_mixed_mm_fo_elimination
has_proportional_error_model
has_random_effect
has_zero_order_absorption
has_zero_order_elimination
list_time_varying_covariates
load_example_model
make_declarative
mu_reference_model
omit_data
plot_individual_predictions
plot_iofv_vs_iofv
predict_influential_individuals
predict_influential_outliers
predict_outliers
print_fit_summary
print_model_code
print_model_symbols
rank_models
read_dataset_from_datainfo
read_model
read_model_from_database
read_model_from_string
rename_symbols
remove_covariance_step
remove_error_model
remove_estimation_step
remove_iiv
remove_iov
remove_lag_time
remove_loq_data
remove_peripheral_compartment
remove_unused_parameters_and_rvs
resample_data
sample_parameters_from_covariance_matrix
sample_individual_estimates
sample_parameters_uniformly
set_additive_error_model
set_bolus_absorption
set_combined_error_model
set_covariates
set_dtbs_error_model
set_estimation_step
set_evaluation_step
set_first_order_absorption
set_first_order_elimination
set_iiv_on_ruv
set_initial_estimates
set_lower_bounds
set_upper_bounds
set_michaelis_menten_elimination
set_mixed_mm_fo_elimination
set_name
set_ode_solver
set_peripheral_compartments
set_power_on_ruv
set_proportional_error_model
set_seq_zo_fo_absorption
set_time_varying_error_model
set_transit_compartments
set_weighted_error_model
set_zero_order_absorption
set_zero_order_elimination
simplify_expression
solve_ode_system
split_joint_distribution
summarize_errors
summarize_modelfit_results
summarize_individuals
summarize_individuals_count_table
transform_etas_boxcox
transform_etas_john_draper
transform_etas_tdist
translate_nmtran_time
unfix_parameters
unfix_parameters_to
update_inits
use_thetas_for_error_stdev
write_csv
write_model
write_results
unconstrain_parameters
undrop_columns
pharmpy.tools Package
create_results
fit
read_results
retrieve_models
run_allometry
run_amd
run_covsearch
run_iivsearch
run_iovsearch
run_modelsearch
run_ruvsearch
run_tool
pharmpy.workflows Package
call_workflow
execute_workflow
split_common_options
default_model_database
default_tool_database
LocalDirectoryDatabase
LocalModelDirectoryDatabase
LocalDirectoryToolDatabase
Log
NullModelDatabase
NullToolDatabase
ModelDatabase
Task
ToolDatabase
Workflow
ModelError
#
exception
pharmpy.
ModelError
[source]
#
Exception for errors in model object