Source code for pharmpy.model.data

r"""
Data
====

.. list-table:: Options for the data module
   :widths: 25 25 50 150
   :header-rows: 1

   * - Option name
     - Default value
     - Type
     - Description
   * - ``na_values``
     - ``[-99]``
     - List
     - Data values to be converted to NA when reading in data
   * - ``na_rep``
     - ``'-99'``
     - str
     - Data value to convert NA to when writing data

"""

import pharmpy.config as config


class DataConfiguration(config.Configuration):
    module = 'pharmpy.data'
    na_values = config.ConfigItem(
        [-99], 'List of data values to be converted to NA when reading data'
    )
    na_rep = config.ConfigItem('-99', 'What to replace NA with in written datasets')


conf = DataConfiguration()




class DatasetError(Exception):
    """Exception for errors in the dataset"""

    pass





class DatasetWarning(Warning):
    """Warning for recoverable issues in the dataset"""

    pass